Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1768Hypothetical protein. (281 aa)    
Predicted Functional Partners:
CSCA_2261
Dihydrolipoamide dehydrogenase.
  
 0.936
CSCA_2835
Kinase domain protein.
  
 
 0.898
CSCA_2838
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.858
CSCA_2264
TPP-dependent acetoin dehydrogenase beta-subunit.
   
 0.799
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.769
CSCA_2557
Microtubule-severing ATPase; Belongs to the AAA ATPase family.
  
 
 0.736
CSCA_2652
Putative stage V sporulation protein D.
  
 
 0.720
CSCA_3119
Stage V sporulation protein D.
  
 
 0.720
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.694
CSCA_2919
Glycosyl transferase group 1.
 
 
 0.688
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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