Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1799ABC transporter related protein. (306 aa)    
Predicted Functional Partners:
CSCA_4662
ABC-2 type transporter.
 
  
 0.791
CSCA_1796
Histidine kinase.
 
 
   0.786
CSCA_1798
Hypothetical protein.
       0.779
CSCA_1797
Hypothetical protein.
       0.746
CSCA_1795
Exonuclease RNase T and DNA polymerase III.
       0.599
CSCA_1165
Transmembrane protein.
 
     0.597
CSCA_1800
Two component transcriptional regulator, winged helix family.
 
    0.578
CSCA_2408
ABC transporter permease.
 
  
 0.578
CSCA_1507
Antibiotic ABC transporter, permease protein.
 
  
 0.547
CSCA_5265
LytTr DNA-binding region.
  
     0.532
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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