Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1901ABC transporter related protein. (255 aa)    
Predicted Functional Partners:
CSCA_1900
Protein of unknown function DUF214.
 
 0.994
CSCA_2213
Protein of unknown function DUF214.
 
 0.979
CSCA_1778
Protein of unknown function DUF214.
 
 0.974
CSCA_1898
Histidine kinase.
 
 
 0.920
CSCA_2214
ABC transporter related protein.
  
  
 
0.902
CSCA_1779
ABC transporter ATPase.
  
  
 
0.901
CSCA_0442
ABC transporter, permease.
 
 
 0.898
CSCA_1803
Protein of unknown function DUF214.
 
 
 0.877
CSCA_3787
Efflux ABC transporter, permease protein.
 
 
 0.876
CSCA_0935
Protein of unknown function DUF214.
 
 
 0.872
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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