Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1907Transcriptional regulator, AraC family. (290 aa)    
Predicted Functional Partners:
CSCA_0018
Hypothetical protein.
 
 
0.695
CSCA_1935
Transcriptional regulator.
 
 
0.686
CSCA_0419
Putative transcription regulator, AraC family.
 
 
0.685
CSCA_1906
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
  
 0.590
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.544
CSCA_0732
ThiJ/PfpI domain protein.
  
 
 0.525
CSCA_3607
Nucleotidyl transferase.
  
  
 0.482
CSCA_4803
Class II glutamine amidotransferase.
     
 0.474
CSCA_1274
Transcriptional regulator, XRE family.
  
 
 0.473
CSCA_1999
Transcriptional regulator, XRE family.
  
 
 0.473
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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