STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1908Hypothetical protein. (203 aa)    
Predicted Functional Partners:
CSCA_3461
Protein of unknown function DUF214.
 
   
 0.530
CSCA_1909
Hypothetical protein.
  
    0.521
CSCA_1100
Hypothetical protein.
  
     0.513
CSCA_2405
Transcriptional regulator, TetR family.
  
     0.473
CSCA_1039
Transcriptional regulator, AraC family.
  
     0.453
CSCA_3432
Transcriptional regulator, TetR family.
  
     0.442
CSCA_1683
Transcriptional regulator, TetR family.
  
     0.400
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.