Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1932Transcriptional regulator. (198 aa)    
Predicted Functional Partners:
CSCA_1933
Nitroreductase-related protein.
 
     0.720
CSCA_1934
Hypothetical protein.
       0.494
CSCA_0892
Transcriptional regulator, TetR family.
  
     0.491
CSCA_3432
Transcriptional regulator, TetR family.
  
     0.474
CSCA_3676
Metal dependent phosphohydrolase.
   
    0.474
CSCA_1928
Hypothetical protein.
  
   
 0.461
CSCA_1929
Hypothetical protein.
  
     0.435
CSCA_4665
Transcriptional regulator, TetR family.
  
     0.431
CSCA_1588
Transcriptional regulator, PadR-like family.
  
    0.414
CSCA_3396
Putative ABC transporter, permease protein.
  
     0.408
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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