Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1933Nitroreductase-related protein. (174 aa)    
Predicted Functional Partners:
CSCA_1932
Transcriptional regulator.
 
     0.720
CSCA_1934
Hypothetical protein.
       0.703
CSCA_4802
Nitroreductase.
  
     0.673
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.603
CSCA_0911
NADPH-dependent FMN reductase.
  
  
 0.510
CSCA_1155
Nitroreductase.
  
     0.501
CSCA_0161
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.498
CSCA_3627
AMP-binding enzyme.
   
 
 0.455
CSCA_2374
NADPH-dependent FMN reductase.
 
  
 0.443
CSCA_3809
NADPH-dependent FMN reductase.
 
  
 0.442
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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