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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1945Protein serine/threonine phosphatase. (619 aa)    
Predicted Functional Partners:
CSCA_1947
Hypothetical protein.
 
  
 0.973
CSCA_1946
Hypothetical protein.
 
    0.970
CSCA_1760
Multi-sensor hybrid histidine kinase.
 
  
 0.887
CSCA_5176
STAS domain protein; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.878
CSCA_3574
PAS domain S-box domain-containing protein.
 
  
 0.858
CSCA_1944
Diguanylate cyclase.
  
  
 0.835
CSCA_5174
Putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.815
CSCA_4382
Signal transduction protein.
 
  
 0.746
spoIIAB
Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.745
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
  
 0.743
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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