STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1979Formylmethanofuran dehydrogenase subunit E region. (183 aa)    
Predicted Functional Partners:
CSCA_1978
Hypothetical protein.
 
    0.771
CSCA_1977
Periplasmic binding protein.
 
    0.726
CSCA_4547
CO dehydrogenase accessory protein CooC.
  
     0.621
CSCA_4549
acetyl-CoA synthase corrinoid iron-sulfur protein large subunit.
  
   
 0.602
CSCA_4540
CO dehydrogenase accessory protein CooC.
  
     0.601
CSCA_4548
acetyl-CoA synthase corrinoid iron-sulfur protein small subunit.
  
   
 0.574
CSCA_4551
CO dehydrogenase/acetyl-CoA synthase complex, beta subunit.
  
     0.561
CSCA_0543
Metal ion (Fe 3+) ABC transporter ATPase.
 
    0.549
CSCA_1976
Hypothetical protein.
       0.545
CSCA_1975
Molybdenum cofactor synthesis domain-containing protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
  
    0.537
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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