STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1981ABC-2 type transporter. (287 aa)    
Predicted Functional Partners:
CSCA_1980
ABC transporter related protein.
 
 
 0.983
CSCA_1982
Hypothetical protein.
  
 0.974
CSCA_0112
ABC transporter related protein.
 
 
 0.810
CSCA_2282
ABC transporter related protein.
 
 
 0.761
CSCA_0850
ABC transporter related protein.
 
 
 0.748
CSCA_0853
ABC transporter related protein.
 
 
 0.747
CSCA_4601
ABC transporter related protein.
 
 
 0.747
CSCA_2075
ABC transporter related protein.
 
 
 0.724
CSCA_1284
ABC transporter.
 
 
 0.711
CSCA_1161
ABC transporter related protein.
 
 
 0.639
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.