STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1983Rh family protein/ammonium transporter. (421 aa)    
Predicted Functional Partners:
CSCA_0843
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.938
CSCA_4803
Class II glutamine amidotransferase.
  
  
 0.821
CSCA_4800
Hypothetical protein.
  
     0.704
CSCA_3545
Hypothetical protein.
  
     0.580
CSCA_4896
Aconitate hydratase domain protein.
  
 
 0.574
CSCA_2192
Conserved unknown protein.
  
     0.566
CSCA_1881
Fumarate lyase.
   
  
 0.532
CSCA_3544
Collagen triple helix repeat protein.
  
     0.457
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.444
CSCA_0915
Nitrogenase; Belongs to the NifH/BchL/ChlL family.
  
  
 0.444
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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