STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1996Glycyl-radical enzyme activating protein family. (301 aa)    
Predicted Functional Partners:
CSCA_1772
Formate C-acetyltransferase.
 
  
 0.860
CSCA_1998
Formate C-acetyltransferase.
 
  
 0.860
CSCA_0866
Formate C-acetyltransferase.
 
  
 0.859
csdB
4-hydroxyphenylacetate decarboxylase large subunit; Decarboxylates phenylacetates with a hydroxyl group in the p- position. Active toward 4-hydroxyphenylacetate and 3,4- dihydroxyphenylacetate, forming 4-methylphenol and 4-methylcatechol respectively.
 
  
 0.857
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
  
 0.856
CSCA_4675
Formate acetyltransferase.
 
  
 0.795
CSCA_5134
Formate acetyltransferase.
 
  
 0.794
CSCA_4656
Adenosylcobinamide-phosphate guanylyltransferase.
   
    0.589
CSCA_1997
Hypothetical protein.
       0.526
CSCA_0076
Iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.448
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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