STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2004Glycoside hydrolase family 1; Belongs to the glycosyl hydrolase 1 family. (260 aa)    
Predicted Functional Partners:
CSCA_1321
Phosphotransferase system lactose/cellobiose-specific IIB subunit.
 
 
 0.989
CSCA_1322
PTS system, lactose/cellobiose family IIC subunit; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.988
CSCA_1323
Phosphotransferase system PTS lactose/cellobiose-specific IIA subunit.
 
 
 0.987
CSCA_3569
PTS system, glucose subfamily, IIA subunit.
 
 
 0.936
CSCA_1324
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.925
CSCA_2538
Glycoside hydrolase.
    
 0.924
CSCA_3244
ROK family protein.
  
 
 0.919
CSCA_3797
ROK family protein.
  
 
 0.919
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.915
CSCA_0096
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.904
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.