STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2019Transcriptional regulator, TetR family. (218 aa)    
Predicted Functional Partners:
CSCA_2018
Betaine reductase.
 
     0.826
CSCA_2017
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family protein.
 
     0.759
CSCA_2036
Betaine reductase.
 
     0.742
CSCA_2035
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family protein.
 
     0.647
CSCA_2016
Betaine reductase complex component B subunit gamma.
 
     0.597
CSCA_2026
Hypothetical protein.
  
     0.488
CSCA_2025
Hypothetical protein.
  
     0.441
CSCA_3173
Transposase, IS4.
  
     0.439
CSCA_2034
Glycine reductase complex component B subunit gamma.
 
     0.433
CSCA_2013
Glycine/sarcosine/betaine reductase complex protein A.
 
     0.419
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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