Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2047Cell wall-binding protein. (1601 aa)    
Predicted Functional Partners:
CSCA_2407
Putative cell wall binding repeat 2-containing protein.
  
     0.773
CSCA_2048
Hypothetical protein.
       0.741
CSCA_3604
Membrane spanning protein.
  
     0.718
CSCA_4781
Glycosyltransferase.
  
     0.596
CSCA_3603
ABC transporter related protein.
  
     0.544
CSCA_5048
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.473
CSCA_4117
Metal dependent phosphohydrolase.
  
     0.471
CSCA_1433
Hypothetical protein.
  
     0.469
CSCA_4789
Oxidoreductase domain protein.
  
     0.466
CSCA_2050
Two component transcriptional regulator, LytTR family.
 
     0.465
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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