Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2060Germination protein, Ger(x)C family. (424 aa)    
Predicted Functional Partners:
CSCA_2061
Spore germination protein.
 
  
 0.964
CSCA_2062
GerA spore germination protein.
 
  
 0.964
CSCA_1061
Spore germination protein KB.
 
  
 0.755
CSCA_2059
Hypothetical protein.
       0.755
CSCA_1058
Spore germination protein.
 
  
 0.733
CSCA_1062
Spore germination protein KB.
 
  
 0.726
CSCA_3942
Germination protein YpeB.
 
   
 0.712
CSCA_3564
GerA spore germination protein.
 
  
 0.683
CSCA_0901
GerA spore germination protein.
 
  
 0.671
CSCA_0050
Hypothetical protein.
  
     0.657
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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