Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2069High affinity gluconate/L-idonate permease. (438 aa)    
Predicted Functional Partners:
CSCA_2068
L-threonine 3-dehydrogenase.
     
 0.649
CSCA_2067
Hypothetical protein.
       0.577
CSCA_2066
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
     
 0.563
CSCA_2070
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.495
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 0.475
xylB
Xylulokinase.
  
  
 0.418
CSCA_2168
Carbohydrate kinase FGGY.
  
  
 0.418
xylB-2
Xylulokinase.
  
  
 0.418
CSCA_4451
Rhamnulokinase.
  
  
 0.418
CSCA_4764
Carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
  
  
 0.418
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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