Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_2085LacI family transcriptional regulator. (333 aa)    
Predicted Functional Partners:
CSCA_4803
Class II glutamine amidotransferase.
    
 
 0.776
CSCA_2083
Binding-protein-dependent transport systems inner membrane component.
     
 0.753
CSCA_2084
ABC transporter, permease protein.
       0.746
potA
ABC-type spermidine/putrescine transport systems, ATPase components; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
     
 0.711
CSCA_2081
ABC transporter substrate-binding protein.
       0.678
CSCA_2758
Phosphocarrier, HPr family.
   
 
 0.671
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.604
CSCA_2079
Purine phosphorylase family 1.
  
  
 0.548
ade-2
Hypothetical protein; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
  
    0.530
CSCA_4337
PAS modulated sigma54 specific transcriptional regulator, Fis family.
   
 
 0.530
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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