Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_2098Aminotransferase class I and II. (399 aa)    
Predicted Functional Partners:
CSCA_4803
Class II glutamine amidotransferase.
  
 
 0.952
CSCA_1055
Lactate/malate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
 0.929
CSCA_0815
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 
 0.926
CSCA_1658
Chorismate mutase.
 
 
 0.926
CSCA_2965
Lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.926
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.923
CSCA_0260
Cystathionine gamma-synthase.
  
 
 0.922
CSCA_1817
Cystathionine gamma-synthase.
  
 
 0.922
CSCA_1359
Glutamate dehydrogenase (NADP(+)); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.917
CSCA_1662
Prephenate dehydrogenase.
  
 
 0.916
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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