Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2102Transcriptional regulator, AraC family. (309 aa)    
Predicted Functional Partners:
CSCA_2307
Hypothetical protein.
 
     0.754
CSCA_2101
Beta-lactamase.
     
 0.720
CSCA_0018
Hypothetical protein.
 
 
 0.719
CSCA_0419
Putative transcription regulator, AraC family.
 
 
 0.696
CSCA_4456
Transcriptional regulator, AraC family.
 
     0.574
CSCA_4208
Hypothetical protein.
   
    0.485
CSCA_2103
Hypothetical protein.
       0.480
CSCA_1935
Transcriptional regulator.
 
 
0.458
CSCA_1907
Transcriptional regulator, AraC family.
 
 
0.444
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.443
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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