Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2114Protein of unknown function DUF583. (240 aa)    
Predicted Functional Partners:
CSCA_2115
Hypothetical protein.
 
  
 0.984
CSCA_3200
CheC, inhibitor of MCP methylation / FliN fusion protein.
    
 
 0.751
CSCA_4641
Xylose isomerase domain protein TIM barrel.
  
     0.574
CSCA_1134
Hypothetical protein.
  
     0.506
CSCA_0789
DNA binding domain-containing protein.
  
     0.482
CSCA_5155
Hypothetical protein.
  
     0.472
CSCA_1056
Hypothetical protein.
  
     0.462
CSCA_3191
Flagellar protein FliS.
    
 
 0.453
CSCA_2116
Alpha/beta hydrolase fold protein.
       0.418
CSCA_2117
Transcriptional regulator, MarR family.
       0.418
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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