STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2115Hypothetical protein. (209 aa)    
Predicted Functional Partners:
CSCA_2114
Protein of unknown function DUF583.
 
  
 0.984
CSCA_4641
Xylose isomerase domain protein TIM barrel.
  
     0.583
CSCA_2117
Transcriptional regulator, MarR family.
 
     0.502
CSCA_5155
Hypothetical protein.
  
     0.444
CSCA_2116
Alpha/beta hydrolase fold protein.
       0.437
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.437
CSCA_1134
Hypothetical protein.
  
     0.429
CSCA_0844
Glutamine synthetase, type I.
  
 
 0.416
CSCA_1788
Glutamine synthetase catalytic region.
  
 
 0.416
CSCA_4200
Glutamine synthetase catalytic region.
  
 
 0.416
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.