Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2128ABC transporter ATP-binding protein. (189 aa)    
Predicted Functional Partners:
CSCA_5080
ABC-3 protein.
  
 
 0.950
CSCA_0547
Ig domain protein group 2 domain protein.
  
  
 0.790
CSCA_0471
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.748
CSCA_4531
Periplasmic solute binding protein.
  
  
 0.748
CSCA_5146
ABC transporter related protein.
  
     0.720
CSCA_2557
Microtubule-severing ATPase; Belongs to the AAA ATPase family.
 
   
 0.665
CSCA_2238
ABC transporter related protein.
 
  
 0.656
CSCA_2127
Hypothetical protein.
       0.631
CSCA_1779
ABC transporter ATPase.
 
  
 0.607
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
     0.577
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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