Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2140Hypothetical protein. (106 aa)    
Predicted Functional Partners:
CSCA_4803
Class II glutamine amidotransferase.
  
 
 0.999
CSCA_2139
Dihydropyrimidine dehydrogenase.
 
 
 0.960
CSCA_4946
NADH dehydrogenase (quinone).
  
 
 0.938
CSCA_2141
D-hydantoinase.
 
  
 0.900
CSCA_0811
NADH dehydrogenase (quinone).
  
 
 0.807
CSCA_2650
NADH dehydrogenase (quinone).
  
 
 0.807
CSCA_1572
Hypothetical protein.
  
 
 0.801
CSCA_4942
Uptake hydrogenase.
  
 
 0.801
CSCA_1098
NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
  
 
 0.799
CSCA_2142
Uracil permease.
 
   
 0.781
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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