STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2148Hypothetical protein. (196 aa)    
Predicted Functional Partners:
CSCA_3200
CheC, inhibitor of MCP methylation / FliN fusion protein.
   
 
 0.781
CSCA_0177
ABC transporter, ATP-binding protein.
  
  
 0.521
CSCA_5252
ABC transporter, ATP-binding protein.
  
  
 0.521
CSCA_4405
FHA domain containing protein.
  
  
 0.497
CSCA_5215
Hypothetical protein.
   
 
 0.496
CSCA_1304
TPR repeat-containing protein.
  
 
 0.486
CSCA_5216
Phage head-tail adaptor.
   
   0.442
CSCA_5176
STAS domain protein; Belongs to the anti-sigma-factor antagonist family.
  
    0.434
CSCA_0096
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.430
CSCA_1324
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.430
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.