STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2155Two component transcriptional regulator, LytTR family. (243 aa)    
Predicted Functional Partners:
CSCA_2154
Sensor histidine kinase-like protein.
 
 
 0.997
CSCA_2314
Putative sensor with HAMP domain.
 
 
 0.579
CSCA_2050
Two component transcriptional regulator, LytTR family.
  
     0.549
CSCA_4573
Signal transduction histidine kinase, LytS.
 
 
 0.532
CSCA_2153
Hypothetical protein.
       0.519
CSCA_5307
Signal transduction histidine kinase, LytS.
 
  
 0.468
CSCA_1197
Putative sensor with HAMP domain.
 
  
 0.441
CSCA_3880
Putative histidine kinase.
 
  
 0.424
CSCA_2179
Accessory gene regulator B.
 
   
 0.407
CSCA_0891
Signal transduction histidine kinase regulating citrate/malate metabolism.
 
  
 0.402
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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