STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2162Short-chain alcohol dehydrogenase family enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (271 aa)    
Predicted Functional Partners:
CSCA_2163
Hypothetical protein.
       0.773
CSCA_0405
3-oxoacyl-(acyl-carrier-protein) reductase.
 
 
 0.748
CSCA_3627
AMP-binding enzyme.
  
 
 0.674
CSCA_2161
Hypothetical protein.
       0.625
CSCA_2164
MarR family transcriptional regulator.
       0.588
CSCA_2165
MORN repeat-containing protein.
   
   0.575
CSCA_2160
Transcriptional regulator, AraC family.
  
    0.431
CSCA_3607
Nucleotidyl transferase.
  
 
 0.431
CSCA_1789
Radical SAM domain protein.
  
    0.401
CSCA_4765
Short-chain dehydrogenase/reductase SDR.
 
 
0.400
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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