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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2168Carbohydrate kinase FGGY. (505 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.961
CSCA_1190
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.945
CSCA_3593
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.945
CSCA_2833
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.940
xylB
Xylulokinase.
  
  
 
0.926
xylB-2
Xylulokinase.
  
  
 
0.925
CSCA_1203
YdaE.
    
  0.905
CSCA_4454
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.689
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
  
 0.630
CSCA_0923
Hypothetical protein.
  
     0.579
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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