STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2174DNA ligase III. (265 aa)    
Predicted Functional Partners:
CSCA_2173
Metal dependent phosphohydrolase.
 
     0.950
CSCA_1030
ATPase associated with various cellular activities AAA_5.
  
     0.758
CSCA_1031
Hypothetical protein.
  
     0.758
CSCA_1033
VWA containing CoxE family protein.
  
     0.754
CSCA_1036
Molybdate metabolism regulator.
  
     0.740
CSCA_0954
Hypothetical protein.
  
     0.737
CSCA_2587
Hypothetical protein.
  
     0.674
CSCA_2182
Phosphotransferase KptA/Tpt1.
 
     0.664
CSCA_2588
Hypothetical protein.
  
     0.659
CSCA_1830
Hypothetical protein.
  
     0.606
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.