Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_2202Type III restriction protein res subunit. (1090 aa)    
Predicted Functional Partners:
CSCA_2201
N-6 DNA methylase.
 
 
 0.989
CSCA_2200
Restriction modification system DNA specificity domain protein.
 
 
 0.980
CSCA_3347
Type I restriction enzyme, specificity subunit.
 
 
 0.964
CSCA_3346
Type I restriction-modification system, M subunit.
 
 
 0.914
CSCA_3345
Restriction endonuclease S subunits-like protein.
 
 
 0.758
CSCA_5182
Type II restriction enzyme, methylase subunit.
  
 
 0.709
CSCA_3498
N-6 DNA methylase.
  
 
 0.696
CSCA_5183
Site-specific modification DNA-methyltransferase.
  
 
 0.696
CSCA_3350
Type I restriction enzyme, methylase subunit.
 
 
 0.688
CSCA_0331
Hypothetical protein.
  
    0.612
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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