Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2219DNA polymerase beta domain protein region. (141 aa)    
Predicted Functional Partners:
CSCA_2218
Protein of unknown function DUF86.
 
     0.954
CSCA_3420
Hypothetical protein.
 
     0.769
CSCA_2216
Two component sensor histidine kinase.
       0.668
CSCA_2217
Two-component response regulator.
       0.668
CSCA_4402
PDZ/DHR/GLGF domain protein.
 
     0.663
CSCA_2220
Histidine triad (HIT) protein.
       0.553
CSCA_3419
Nucleotidyltransferase.
  
     0.446
CSCA_1330
Hypothetical protein.
  
     0.434
CSCA_4803
Class II glutamine amidotransferase.
       0.415
CSCA_2215
Peptidase S41.
       0.408
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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