Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2240Cell wall binding repeat 2 family protein. (447 aa)    
Predicted Functional Partners:
CSCA_3604
Membrane spanning protein.
  
     0.710
CSCA_2241
Hypothetical protein.
       0.693
CSCA_4781
Glycosyltransferase.
  
     0.685
CSCA_3603
ABC transporter related protein.
  
     0.516
CSCA_4789
Oxidoreductase domain protein.
  
     0.493
CSCA_2242
Putative glycosylase.
       0.471
CSCA_4358
Hypothetical protein.
  
     0.469
CSCA_4356
Hypothetical protein.
  
     0.460
CSCA_4117
Metal dependent phosphohydrolase.
  
     0.453
CSCA_2243
Hypothetical protein.
       0.447
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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