Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2242Putative glycosylase. (1215 aa)    
Predicted Functional Partners:
CSCA_2243
Hypothetical protein.
       0.727
CSCA_2241
Hypothetical protein.
 
    
0.681
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
    0.660
CSCA_2244
Rubredoxin-type Fe(Cys)4 protein.
  
    0.480
CSCA_2240
Cell wall binding repeat 2 family protein.
       0.471
araB
L-ribulokinase.
 
     0.443
CSCA_1190
L-ribulose-5-phosphate 4-epimerase.
 
     0.419
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.