STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2248Putative cell wall binding repeat 2-containing protein. (340 aa)    
Predicted Functional Partners:
CSCA_2249
Leucine-rich repeat protein.
 
     0.709
CSCA_4781
Glycosyltransferase.
  
     0.669
CSCA_3604
Membrane spanning protein.
  
     0.637
CSCA_1430
Hypothetical protein.
 
  
 0.522
CSCA_3603
ABC transporter related protein.
  
    0.497
CSCA_4789
Oxidoreductase domain protein.
  
     0.469
CSCA_4117
Metal dependent phosphohydrolase.
  
     0.466
CSCA_2706
Hypothetical protein.
 
    0.450
CSCA_4902
Cell wall hydrolase.
  
  
 0.448
CSCA_4356
Hypothetical protein.
 
    0.447
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.