Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2253Transporter protein. (391 aa)    
Predicted Functional Partners:
CSCA_2252
uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
     0.790
CSCA_5048
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.664
CSCA_0292
Hypothetical protein.
  
     0.647
CSCA_2254
uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
     0.646
CSCA_2251
Hypothetical protein.
 
     0.562
CSCA_0295
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
  
   
 0.545
CSCA_1754
Amidohydrolase.
  
     0.454
CSCA_0055
Hypothetical protein.
  
     0.424
CSCA_2131
Uroporphyrinogen decarboxylase/methylcobalamin:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.418
CSCA_1978
Hypothetical protein.
  
     0.417
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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