Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_2271DNA-binding response regulator. (230 aa)    
Predicted Functional Partners:
CSCA_2270
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.894
CSCA_1122
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
 
 0.823
CSCA_2281
Histidine kinase.
 
 
 0.822
CSCA_0155
Histidine kinase.
 
 
 0.817
CSCA_2549
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
 
 0.816
CSCA_0185
His Kinase A (phosphoacceptor) domain protein.
 
 
 0.815
CSCA_5315
Histidine kinase.
 
 
 0.812
CSCA_3264
Histidine kinase.
 
 
 0.808
CSCA_0367
Histidine kinase.
 
 
 0.802
CSCA_5052
PAS/PAC sensor signal transduction histidine kinase.
 
 
 0.793
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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