Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2286Transcriptional regulator, MerR family. (245 aa)    
Predicted Functional Partners:
CSCA_0995
Transcriptional regulator, MerR family.
  
   
 0.659
CSCA_4476
Transcriptional regulator, MerR family.
  
     0.542
CSCA_2160
Transcriptional regulator, AraC family.
  
  
 0.512
CSCA_0844
Glutamine synthetase, type I.
  
 
 0.500
CSCA_1788
Glutamine synthetase catalytic region.
  
 
 0.500
CSCA_4200
Glutamine synthetase catalytic region.
  
 
 0.500
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.483
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.448
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.442
CSCA_2285
Hypothetical protein.
       0.440
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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