Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CSCA_2311ABC transporter (substrate-binding protein). (365 aa)    
Predicted Functional Partners:
CSCA_2309
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.956
CSCA_2310
ABC transporter related protein.
  
 0.930
CSCA_2313
Putative sensor with HAMP domain.
 
   
 0.756
CSCA_1196
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.751
CSCA_1195
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.745
CSCA_2316
Periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.728
CSCA_2312
Two component transcriptional regulator, AraC family.
 
     0.695
CSCA_1194
ABC transporter related protein.
  
 0.624
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.533
CSCA_2314
Putative sensor with HAMP domain.
 
     0.498
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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