Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_2377Transcriptional regulator, DeoR family. (253 aa)    
Predicted Functional Partners:
CSCA_2593
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
 
  
 0.881
CSCA_3247
PTS system, fructose family, IIA component.
 
  
 0.876
CSCA_2136
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.844
CSCA_2594
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.824
CSCA_3249
Hypothetical protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.811
CSCA_2134
PTS system, fructose subfamily, IIC subunit.
 
  
 0.698
CSCA_3248
Hypothetical protein.
 
  
 0.694
CSCA_2135
Putative PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.535
CSCA_1819
PTS system, glucose-specific IIBC subunit.
 
  
 0.505
CSCA_3801
Protein associated with the phosphotransferase system IIB subunit.
 
  
 0.502
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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