Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2383Aminotransferase class I and II. (400 aa)    
Predicted Functional Partners:
CSCA_0260
Cystathionine gamma-synthase.
 
 
 0.933
CSCA_1817
Cystathionine gamma-synthase.
 
 
 0.931
CSCA_4374
Cystathionine gamma-synthase.
  
 
 0.930
CSCA_3858
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.925
CSCA_3667
Homocysteine S-methyltransferase.
     
 0.923
CSCA_0261
Pyridoxal-5'-phosphate-dependent protein beta subunit.
    
 0.918
CSCA_2759
Aminotransferase class I and II.
 
  
0.917
CSCA_2911
Aminotransferase class I and II.
  
  
 
0.915
CSCA_0240
O-acetylhomoserine/O-acetylserine sulfhydrylase.
    
 0.914
CSCA_1815
O-acetylhomoserine/O-acetylserine sulfhydrylase.
    
 0.914
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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