Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2390Oxidoreductase ferredoxin subunit. (65 aa)    
Predicted Functional Partners:
CSCA_2387
Oxidoreductase subunit.
 
  
 0.905
CSCA_3671
Isocitrate dehydrogenase (NAD(+)).
     
  0.900
CSCA_2388
Hypothetical protein.
 
  
 0.826
CSCA_2389
Keto/oxoacid ferredoxin oxidoreductase, beta subunit.
 
  
 0.820
CSCA_1359
Glutamate dehydrogenase (NADP(+)); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
  0.803
CSCA_0815
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
     
  0.800
CSCA_1881
Fumarate lyase.
     
  0.800
CSCA_2756
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.800
argH
Argininosuccinate lyase.
     
  0.800
CSCA_5143
L-aspartate oxidase.
     
  0.800
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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