Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CSCA_2391Amino acid permease-associated region. (449 aa)    
Predicted Functional Partners:
CSCA_4873
Amino acid permease-associated region.
  
     0.573
CSCA_2392
Putative major facilitator family protein.
 
     0.564
CSCA_1527
Amino acid permease-associated region.
  
     0.510
CSCA_1305
Alpha amylase catalytic region.
   
 0.505
CSCA_2673
Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family.
   
 0.505
hisC
Hypothetical protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.462
arcA
Arginine deiminase ArcA.
 
  
 0.442
CSCA_2390
Oxidoreductase ferredoxin subunit.
       0.440
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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