Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2409Transporter. (253 aa)    
Predicted Functional Partners:
CSCA_2410
ABC transporter related protein.
 
  
 0.876
CSCA_2408
ABC transporter permease.
 
    
0.690
CSCA_0345
GCN5-related N-acetyltransferase.
  
    0.659
CSCA_1286
Hypothetical protein.
  
     0.651
CSCA_1280
Protein of unknown function DUF1835.
  
     0.600
CSCA_2411
Two component transcriptional regulator, winged helix family.
 
   
 0.590
CSCA_2412
Histidine kinase.
 
     0.585
CSCA_1247
Hypothetical protein.
  
     0.577
CSCA_1281
Protein of unknown function DUF1835.
  
     0.513
CSCA_1246
Von Willebrand factor type A.
  
     0.506
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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