Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2417Hypothetical protein. (70 aa)    
Predicted Functional Partners:
CSCA_1846
acyl-CoA dehydrogenase domain protein.
  
 
 0.718
CSCA_4803
Class II glutamine amidotransferase.
  
  
 0.711
CSCA_5061
uroporphyrin-III C-methyltransferase.
  
  
 0.688
CSCA_3276
Rubrerythrin.
  
 
 0.676
CSCA_2418
Cell shape determining protein, MreB/Mrl family.
       0.674
CSCA_0819
Flavin reductase domain protein FMN-binding.
  
 
 0.655
CSCA_2244
Rubredoxin-type Fe(Cys)4 protein.
  
 
 0.621
CSCA_1331
Phospholipase C zinc-binding protein.
  
     0.541
CSCA_3882
Adenylate cyclase.
 
     0.530
CSCA_0539
4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 
 0.486
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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