Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2419Hypothetical protein. (368 aa)    
Predicted Functional Partners:
CSCA_0368
SNARE associated Golgi protein.
 
     0.705
CSCA_0903
GerKC4.
  
     0.659
CSCA_3562
Germination protein, Ger(x)C family.
  
     0.641
CSCA_0892
Transcriptional regulator, TetR family.
  
     0.610
CSCA_4651
Extracellular solute-binding protein family 1.
  
     0.606
CSCA_0193
Transcriptional regulator, AraC family.
  
     0.603
CSCA_0789
DNA binding domain-containing protein.
  
     0.603
CSCA_0826
Hypothetical protein.
 
     0.602
CSCA_5327
SH3 type 3 domain protein.
  
     0.581
CSCA_0345
GCN5-related N-acetyltransferase.
  
     0.580
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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