STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2452Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (422 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
   
    0.697
CSCA_2453
NUDIX hydrolase.
       0.642
CSCA_4014
Nucleoside recognition domain protein.
  
  
 0.600
CSCA_4013
Nucleoside recognition domain protein.
  
  
 0.560
hisS
histidyl-tRNA synthetase.
  
  
 0.543
CSCA_3119
Stage V sporulation protein D.
 
  
 0.521
CSCA_3115
Stage V sporulation protein E; Belongs to the SEDS family.
 
  
 0.507
CSCA_2652
Putative stage V sporulation protein D.
 
  
 0.495
CSCA_3685
Protein of unknown function DUF1727.
 
  
 0.483
CSCA_3541
Stage II sporulation protein P.
   
  
 0.450
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.