Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (440 aa)    
Predicted Functional Partners:
xylB-2
Xylulokinase.
 
 
 0.990
xylB
Xylulokinase.
 
 
 0.977
CSCA_2168
Carbohydrate kinase FGGY.
 
 
 0.958
CSCA_2593
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
   
 
 0.939
CSCA_2134
PTS system, fructose subfamily, IIC subunit.
     
 0.921
CSCA_3248
Hypothetical protein.
     
 0.921
CSCA_1630
Kinase, PfkB family.
    
 0.915
CSCA_3801
Protein associated with the phosphotransferase system IIB subunit.
     
 0.908
CSCA_3800
PTS system, fructose-specific IIC component.
     
 0.907
CSCA_1203
YdaE.
    
  0.901
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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