Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2545Transcriptional regulator. (129 aa)    
Predicted Functional Partners:
CSCA_2546
Hypothetical protein.
 
 
 0.986
CSCA_1744
Peptidase M56 BlaR1.
 
 
 0.954
CSCA_2333
Putative beta-lactamase-inducing penicillin-binding protein.
 
 
 0.954
CSCA_1349
Peptidase M56, BlaR1.
 
 
 0.946
CSCA_1702
Peptidase M56 BlaR1.
 
 
 0.946
CSCA_1048
Copper ion binding protein.
  
  
 0.600
CSCA_3219
Heavy metal transport/detoxification protein.
  
  
 0.600
CSCA_0131
Cadmium-translocating P-type ATPase.
  
  
 0.557
CSCA_1047
Copper-translocating P-type ATPase.
  
  
 0.557
CSCA_2547
Surface-layer protein.
       0.545
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.