Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_2552Major facilitator superfamily MFS_1. (433 aa)    
Predicted Functional Partners:
CSCA_5061
uroporphyrin-III C-methyltransferase.
  
  
 0.709
CSCA_4842
Prophage protein.
   
    0.580
CSCA_5212
Phage-like protein.
   
    0.580
CSCA_2123
Formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.514
CSCA_0358
Major facilitator superfamily transporter.
 
   
 0.488
CSCA_2556
Pyruvate ferredoxin/flavodoxin oxidoreductase.
 
     0.478
CSCA_2553
Thiamine pyrophosphate protein domain protein TPP-binding.
       0.449
CSCA_2554
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
    0.442
CSCA_4803
Class II glutamine amidotransferase.
      
 0.428
CSCA_4944
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.417
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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