STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2575ABC transporter-like protein. (299 aa)    
Predicted Functional Partners:
CSCA_2576
Transcriptional regulator, GntR family.
 
  
 0.964
CSCA_2574
Hypothetical protein.
 
     0.959
CSCA_4662
ABC-2 type transporter.
  
 0.735
CSCA_1300
Transcriptional regulator, GntR family.
 
  
 0.663
CSCA_0183
Hypothetical protein.
  
 
 0.602
CSCA_5251
Transcriptional regulator, GntR family.
 
  
 0.501
CSCA_1981
ABC-2 type transporter.
  
 
 0.499
CSCA_4078
ABC-2 type transporter.
 
  
 0.482
CSCA_1566
Hypothetical protein.
  
 
 0.479
CSCA_2464
Hypothetical protein.
  
 
 0.479
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.